PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g02950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 202aa    MW: 21442 Da    PI: 9.445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g02950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1965115155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta +Aa a+++a+++++g
  Vang09g02950.1  65 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFPTAIGAALAYDEAARAMYG 115
                     56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.23E-3065122No hitNo description
PfamPF008471.7E-1365115IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2066123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3066123IPR001471AP2/ERF domain
PROSITE profilePS5103221.15366123IPR001471AP2/ERF domain
SMARTSM003804.8E-3666129IPR001471AP2/ERF domain
PRINTSPR003673.1E-96778IPR001471AP2/ERF domain
PRINTSPR003673.1E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MHMLAKAHSK GDGTKSLAKI LAKWKEYNAQ LDSCDDADKP VRKVPAKGSK KGCMKGKGGP  60
ENSRCNYRGV RQRTWGKWVA EIREPNRGKR LWLGTFPTAI GAALAYDEAA RAMYGSCARL  120
NFLNVSVSSF SEESSKDSPL ANHSGSSKAV STNESMVSLS NSKGGGAEED VDMEPISLSL  180
SVKHENGEGE SGISSSPPSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1766122259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1766122562ATERF1
3gcc_A4e-1766122562ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499788.11e-142PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotA2WL192e-51DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF71e-51DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0S3SH981e-146A0A0S3SH98_PHAAN; Uncharacterized protein
STRINGGLYMA12G32400.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-40DRE-binding protein 2A